# Bayesian Gaussian Graphical Models

## Documentation for package ‘BGGM’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

assess_predictability | Assess Predictability
bayes_R2 | Bayesian Variance Explained (R2)
bfi | 25 Personality items representing 5 factors
coef.estimate | Precision Matrix to Multiple Regression
confirm | Confirmatory Hypothesis Testing
convergence | MCMC Convergence Plots
csws | Contingencies of Self-Worth Scale (CSWS)
diagnostics | Regression Diagnostic Plots for 'estimate' Objects
estimate | GGMs with Credible Intervals or the Region of Practical Equivalence
explore | GGMs with Exploratory Bayesian Hypothesis Testing
fisher_r2z | Fisher Z Transformation
fisher_z2r | Fisher Z Back Transformation
fitted.estimate | Fitted Values for 'estimate' Objects
ggm_compare_bf | Compare GGMs with Bayesian Hypothesis Testing
ggm_compare_estimate | S3 estimate method
ggm_compare_estimate.default | Compare Edges (Partial Correlations) Between GGMs with the Posterior Distribution
ggm_compare_ppc | Compare GGMs with the Posterior Predictive Distribution
ggm_compare_ppc.default | Compare GGMs with the Posterior Predictive Distribution
iri | Interpersonal Reactivity Index (IRI)
mae | Mean Absolute Error
map | Maximum A Posteriori Precision Matrix
mape | Mean Absolute Percentage Error
mse | Mean Squared Error
plot.ggm_compare_ppc | Plot 'ggm_compare_ppc' Objects
plot.metric | Plot 'metric' Objects
plot.select.estimate | Plot 'select.estimate' Network
plot.select.explore | Plot 'select.explore' Network
plot.select.ggm_compare_bf | Plot 'select.ggm_compare_bf' Objects
plot.summary.estimate | Plot 'summary.estimate'
plot.summary.explore | Plot 'summary.explore'
plot_adjacency | Plot Adjacency Matrix
posterior_predict | Posterior Predictive Distribution for 'estimate' Objects
pp_check | Posterior Predictive Checks for 'BGGM' Objects
pp_check.estimate | Posterior Predictive Checks for 'BGGM' Objects
predict.estimate | Prediction from an 'estimate' Object
print.coef.estimate | Print method for 'coef.estimate' objects
print.confirm | Print Method for 'confirm' Objects
print.estimate | Print method for 'estimate.default' objects
print.explore | Print method for 'explore' objects
print.fitted.estimate | Print Method for 'fitted.estimate' Objects
print.ggm_compare_bf | Print method for 'ggm_compare_bf' objects
print.ggm_compare_estimate | Print method for 'ggm_compare_estimate' objects
print.ggm_compare_ppc | Print method for 'ggm_compare_ppc.default' objects
print.map | Print Method for 'map' Objects
print.metric | Print Method for 'metric' Objects
print.post.pred | Print Method for 'post.pred' Objects
print.predict.estimate | Print Method for 'predict.estimate' Objects
print.select.estimate | Print method for 'select.estimate' objects
print.select.explore | Print method for 'select.explore' objects
print.select.ggm_compare_bf | Print method for 'select.ggm_compare_bf' objects
print.select.ggm_compare_estimate | Print method for 'select.ggm_compare_estimate' objects
print.summary.estimate | Summary method for 'summary.estimate' objects
print.summary.explore | Summary method for 'summary.explore' objects
print.summary.ggm_compare_bf | Summary method for 'summary.ggm_compare_bf' objects
print.summary.ggm_compare_ppc | Summary method for 'summary.ggm_compare_ppc' objects
print.summary.ggm_estimate_bf | Summary method for 'summary.ggm_compare_bf' objects
print.summary.ggm_estimate_compare | Summary method for 'summary.ggm_compare_estimate' objects
print.summary.metric | Print Method for 'summary.metric' Object
ptsd | post-traumatic stress disorder dataset
ptsd_cor1 | post-traumatic stress disorder correlation matrix (# 1)
ptsd_cor2 | post-traumatic stress disorder correlation matrix (# 2)
ptsd_cor3 | post-traumatic stress disorder correlation matrix (# 3)
ptsd_cor4 | post-traumatic stress disorder correlation matrix (# 4)
residuals.estimate | Residuals for 'estimate' Objects
rmse | Root Mean Squared Error
rsa | Resilience Scale of Adults (RSA)
select | S3 select method
select.estimate | Select Graphical Structure with Estimation Based Methods
select.explore | Select Graphical Structure with the Bayes Factor
select.ggm_compare_bf | Select Graphical Structure with the Bayes Factor
select.ggm_compare_estimate | Edge Differences and (Practical) Equivalence Between GGMs
shiny_bggm | 'shiny_bggm' Generic
shiny_bggm.explore | Shiny App for 'explore' Objects
summary.confirm | Summary Method for 'confirm' Objects
summary.estimate | Summary method for 'estimate.default' objects
summary.explore | Summary method for 'explore' objects
summary.ggm_compare_bf | Summary method for 'ggm_compare_bf' objects
summary.ggm_compare_estimate | Summary method for 'ggm_compare_estimate.default' objects
summary.ggm_compare_ppc | Summary method for 'ggm_compare_ppc.default' objects
summary.metric | Summary Method for 'metric' Objects
summary.select.estimate | Summary method for 'select.estimate' objects
summary.select.explore | Summary method for 'select.explore' objects
summary.select.ggm_compare_bf | Print method for 'select.ggm_compare_bf' objects
summary.select.ggm_compare_estimate | Summary method for 'select.ggm_compare_estimate' objects
tas | Toronto Alexithymia Scale (TAS)