# 'DrugBank' Database XML Parser

## Documentation for package ‘dbparser’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A B C D E G L R T

## -- A --

articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser

## -- B --

books | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser

## -- C --

carriers | Carriers/ Enzymes/ Targets/ Transporters parsers
carriers_actions | Carriers/ Enzymes/ Targets/ Transporters Actions parsers
carriers_articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
carriers_attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
carriers_links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
carriers_polypeptides | Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
carriers_polypeptides_go | Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
carriers_polypeptides_pfams | Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
carriers_polypeptides_syn | Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
carriers_polypep_ex_ident | Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
carriers_textbooks | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
cett | Run all CETT related parsers
cett_actions_doc | Carriers/ Enzymes/ Targets/ Transporters Actions parsers
cett_doc | Carriers/ Enzymes/ Targets/ Transporters parsers
cett_ex_identity_doc | Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
cett_go_doc | Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
cett_poly_doc | Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
cett_poly_pfms_doc | Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
cett_poly_syn_doc | Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers

## -- D --

dbparser | dbparser: A package for reading and parsing *DrugBank* xml database.
drugs | Run all drug related parsers
drugs_articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
drugs_attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
drugs_links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
drugs_textbooks | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
drug_affected_organisms | Drug Affected Organism parser
drug_ahfs_codes | Drug ahfs-codes parser
drug_atc_codes | Drug ATC Codes element parser
drug_calc_prop | Drug Calculated Properties parser
drug_categories | Drug Categories parser
drug_classification | Drug Classification parser
drug_dosages | Drug Dosages parser
drug_element | extracts the given drug elements and return data as list of tibbles.
drug_element_options | returns 'drug_element' valid options.
drug_exp_prop | Drug Experimental Properties parser
drug_external_links | Drug External Links parser
drug_ex_identity | Drug External Identifiers parser
drug_food_interactions | Drug Groups parser
drug_general_information | Drugs General Information parser
drug_groups | Drug Groups parser
drug_interactions | Drug Interactions parser
drug_intern_brand | Drug International Brands parser
drug_manufacturers | Drug Manufacturers parser
drug_mixtures | Drug Mixtures parser
drug_packagers | Drug Packagers parser
drug_patents | Drug Patents parser A property right issued by the United States Patent and Trademark Office (USPTO) to an inventor for a limited time, in exchange for public disclosure of the invention when the patent is granted. Drugs may be issued multiple patents.
drug_pathway | Drug Pathway parser
drug_pathway_drugs | Drug Pathway Drugs parser
drug_pathway_enzyme | Drug Pathway Enzymes parser
drug_pdb_entries | Drug pdb-entries parser
drug_pharmacology | Drug Pharmacology parser
drug_prices | Drug Prices Parsers
drug_products | Drug Products parser
drug_reactions | Drug Reactions Parsers
drug_reactions_enzymes | Drug Reactions Enzymes Parsers
drug_salts | Drug Salts parser
drug_sequences | Drug Sequences parser
drug_snp_adverse_reactions | Drug SNP Adverse Drug Reactions parser
drug_snp_effects | Drug SNP Effects parser
drug_syn | Drug Synonyms parser

## -- E --

enzymes | Carriers/ Enzymes/ Targets/ Transporters parsers
enzymes_actions | Carriers/ Enzymes/ Targets/ Transporters Actions parsers
enzymes_articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
enzymes_attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
enzymes_links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
enzymes_polypeptides | Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
enzymes_polypeptides_go | Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
enzymes_polypeptides_pfams | Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
enzymes_polypeptides_syn | Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
enzymes_polypep_ex_ident | Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
enzymes_textbooks | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser

## -- G --

get_drugbank_exported_date | Return uploaded drugbank database exported date
get_drugbank_metadata | Return uploaded drugbank database metadata
get_drugbank_version | Return uploaded drugbank database version

## -- L --

links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser

## -- R --

read_drugbank_xml_db | Reads *DrugBank* xml database and load it into memory.
references | Drugs/ Carriers/ Enzymes/ Targets/ Transporters references element parser
run_all_parsers | extracts the all drug elements and return data as list of tibbles.

## -- T --

targets | Carriers/ Enzymes/ Targets/ Transporters parsers
targets_actions | Carriers/ Enzymes/ Targets/ Transporters Actions parsers
targets_articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
targets_attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
targets_links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
targets_polypeptides | Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
targets_polypeptides_go | Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
targets_polypeptides_pfams | Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
targets_polypeptides_syn | Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
targets_polypep_ex_ident | Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
targets_textbooks | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser
transporters | Carriers/ Enzymes/ Targets/ Transporters parsers
transporters_actions | Carriers/ Enzymes/ Targets/ Transporters Actions parsers
transporters_articles | Drugs/ Carriers/ Enzymes/ Targets/ Transporters articles element parser
transporters_attachments | Drugs/ Carriers/ Enzymes/ Targets/ Transporters attachments element parser
transporters_links | Drugs/ Carriers/ Enzymes/ Targets/ Transporters links element parser
transporters_polypeptides | Carriers/ Enzymes/ Targets/ Transporters Polypeptide parsers
transporters_polypeptides_go | Carriers/ Enzymes/ Targets/ Transporters Polypeptide GO Classifier parsers
transporters_polypeptides_pfams | Carriers/ Enzymes/ Targets/ Transporters Polypeptide PFAMS parsers
transporters_polypeptides_syn | Carriers/ Enzymes/ Targets/ Transporters Polypeptide Synonyms parsers
transporters_polypep_ex_ident | Carriers/ Enzymes/ Targets/ Transporters Polypeptide External Identifiers parsers
transporters_textbooks | Drugs/ Carriers/ Enzymes/ Targets/ Transporters books element parser