# Distance Sampling Simulations

## Documentation for package ‘DSsim’ version 1.1.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add.hotspot | S4 generic method to add a hotspot to the density grid
add.hotspot-method | S4 generic method to add a hotspot to the density grid
check.sim.setup | check.sim.setup
cov.summary.list | Covariate Truncation Simulation Summaries
covmod.summary.list | Covariate Truncation Simulation Summaries
create.bins | Create bins from a set of binned distances and a set of cutpoints.
create.region.table | S4 generic method to generate a region table
create.region.table-method | S4 generic method to generate a region table
create.sample.table | S4 generic method to generate a sample table
create.sample.table-method | S4 generic method to generate a sample table
create.survey.results | S4 generic method to simulate a survey
create.survey.results-method | S4 generic method to simulate a survey
data.for.distance | data.for.distance
DDF.Analysis-class | Class "DDF.Analysis"
DDF.Data-class | S4 Class "DDF.Data"
Density-class | Class "Density"
description.summary | Provides a description of the summary object/output Prints a list of the terms used in the simulation summary.
Design.Summary-class | S4 Class "Design.Summary"
Detectability-class | S4 Class "Detectability"
generate.population | S4 generic method to generate an instance of a population
generate.population-method | S4 generic method to generate an instance of a population
generate.transects | S4 generic method to generate an instance of a design
generate.transects-method | S4 generic method to generate an instance of a design
get.area | Returns the area of the region
get.area-method | Returns the area of the region
get.distance.data | S4 generic method to extract distance data
get.distance.data-method | S4 generic method to extract distance data
get.N | S4 generic method to return N
get.N-method | S4 generic method to return N
histogram.N.ests | histogram.N.ests
Line.Transect-class | S4 Class "Line.Transect"
LT.Design-class | Virtual Class "LT.Design" extends Class "Survey.Design"
LT.Survey-class | Virtual Class "LT.Survey" extends class "Survey"
LT.Survey.Results-class | S4 Class "LT.Survey.Results"
make.ddf.analysis.list | Creates a list of DDF.Analysis objects
make.density | Creates a Density object
make.design | Creates a Survey.Design object
make.detectability | Creates a Detectablility object
make.population.description | Creates a Population.Description object
make.region | Creates a Region object
make.simulation | Creates a Simulation object
Obs.Table-class | Class "Obs.Table"
param.list | Parameter Estimates from Covariate Simulation
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
plot-method | Plot
Point.Transect-class | S4 Class "Point.Transect"
Population-class | Class "Population"
Population.Description-class | Class "Population.Description"
Population.Summary-class | S4 Class "Population.Summary"
PT.Design-class | Virtual Class "PT.Design" extends Class "Survey.Design"
PT.Survey-class | Virtual Class "PT.Survey" extends class "Survey"
Region-class | Class "Region"
Region.Table-class | S4 Class "Region.Table"
rename.duplicates | Renumbers the object IDs for the duplicate observations generated when bootstrapping
rtpois | Randomly generates values from a zero-truncated Poisson distribution
run | S4 generic method to run a simulation
run-method | S4 generic method to run a simulation
run.analysis | S4 generic method to run analyses
run.analysis-method | S4 generic method to run analyses
Sample.Table-class | Class "Sample.Table"
save.sim.results | save.sim.results
show-method | show
show-method | show
Simulation-class | Class "Simulation"
Simulation.Summary-class | Class "Simulation.Summary"
Single.Obs.DDF.Data-class | S4 Class "Single.Obs.DDF.Data"
Single.Obs.LT.Survey-class | Class "Single.Obs.LT.Survey"
Single.Obs.PT.Survey-class | Class "Single.Obs.PT.Survey"
summary-method | summary
summary.list | Truncation Simulation Summaries
Survey-class | Virtual Class "Survey"
Survey.Design-class | S4 Class "Survey.Design"
Survey.Results-class | S4 Class "Survey.Results"
Transect-class | S4 Virtual Class "Transect"
transects.shp | Shapefile describing the transects