# Comparison of Trees using a Tree Defining Polynomial

## Documentation for package ‘treenomial’ version 1.1.2

- DESCRIPTION file.

## Help Pages

alignPoly | Align various types of coefficient matrices
allTrees | Calculate all full unordered m-ary trees up to n tips
plotExtremeTrees | Plot the min/max distance trees from a target tree
polyDist | Calculates the distance between coefficient matrices
polyToDistMat | Calculates the distance matrix from a list coefficient matrices
treeDist | Calculates the distance between trees
treeJuliaSet | Plots a Julia Set for a tree
treeToDistMat | Calculates the distance matrix from a list of phylo objects
treeToPoly | Convert trees to coefficient matrices
wedge | Performs the wedge operation