# Spatial Temporal Aggregated Predictor Models via 'stan'

## Documentation for package ‘rstap’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

rstap-package | The 'rstap' package.
adapt_delta | Target average acceptance probability
as.array.stapreg | Extract the posterior sample via matrix
as.data.frame.stapreg | Extract the posterior sample via matrix
as.data.frame.summary.stapreg | Summary method for stapreg objects
as.matrix.stapreg | Extract the posterior sample via matrix
cauchy | Prior distributions and options
check_constant_vars | Check if any variables in a model frame are constants (the exception is that a constant variable of all 1's is allowed)
coef.stapreg | Methods for stapreg objects
confint.stapreg | Methods for stapreg objects
decov | Prior distributions and options
example_model | Example model
exponential | Prior distributions and options
fitted.stapreg | Methods for stapreg objects
fixef | Methods for stapreg objects
fixef.stapreg | Methods for stapreg objects
get_stapless_formula | get_stapless_formula
homog_distance_data | Datasets for rstap examples
homog_longitudinal_bef_data | Datasets for rstap examples
homog_longitudinal_distance_data | Datasets for rstap examples
homog_longitudinal_subject_data | Datasets for rstap examples
homog_longitudinal_time_data | Datasets for rstap examples
homog_subject_data | Datasets for rstap examples
laplace | Prior distributions and options
lasso | Prior distributions and options
lkj | Prior distributions and options
log_lik | Pointwise log-likelihood matrix
log_lik.stapreg | Pointwise log-likelihood matrix
log_normal | Prior distributions and options
nfix | Methods for stapreg objects
nfix.stapreg | Methods for stapreg objects
ngrps.stapreg | Methods for stapreg objects
nobs.stapreg | Methods for stapreg objects
normal | Prior distributions and options
nsap.stapreg | Methods for stapreg objects
nstap.stapreg | Methods for stapreg objects
ntap.stapreg | Methods for stapreg objects
pairs.stapreg | Pairs method for stapreg objects
pairs_condition | Pairs method for stapreg objects
pairs_style_np | Pairs method for stapreg objects
plot.stapreg | Plot method for stapreg objects
posterior_interval | Posterior uncertainty intervals
posterior_interval.stapreg | Posterior uncertainty intervals
posterior_predict | Draw from posterior predictive distribution
posterior_predict.stapreg | Draw from posterior predictive distribution
predictive_error | In-sample or out-of-sample predictive errors
predictive_error.stapreg | In-sample or out-of-sample predictive errors
predictive_interval | Predictive intervals
predictive_interval.ppd | Predictive intervals
predictive_interval.stapreg | Predictive intervals
print.stapreg | Print method for stapreg objects
print.summary.stapreg | Summary method for stapreg objects
priors | Prior distributions and options
prior_summary | Summarize the priors used for an rstap model
prior_summary.stapreg | Summarize the priors used for an rstap model
product_normal | Prior distributions and options
ranef.stapreg | Methods for stapreg objects
residuals.stapreg | Methods for stapreg objects
rstap | The 'rstap' package.
rstap-datasets | Datasets for rstap examples
se.stapreg | Methods for stapreg objects
sigma | Methods for stapreg objects
sigma.stapreg | Methods for stapreg objects
stapreg | Create a stapreg object
stapreg-methods | Methods for stapreg objects
stapreg-objects | Fitted model objects
stap_data | Create a stap_data object
stap_glm | Bayesian generalized spatial-temporal aggregated predictor(STAP) models via Stan
stap_glm.fit | Fitting Generalized Linear STAP models
stap_glmer | Bayesian spatial-temporal generalized linear models with group-specific terms via Stan
stap_lm | Bayesian generalized spatial-temporal aggregated predictor(STAP) models via Stan
stap_lmer | Bayesian spatial-temporal generalized linear models with group-specific terms via Stan
stap_termination | Spatial-Temporal Exposure Termination-Maximization Estimates
stap_termination.stapreg | Spatial-Temporal Exposure Termination-Maximization Estimates
student_t | Prior distributions and options
summary.stapreg | Summary method for stapreg objects
validate_distancedata | Validate distance_data
validate_family | Check family argument
validate_newdata | Validate newsubjdata argument for posterior_predict, log_lik, etc.
validate_timedata | Validate time_data
validate_weights | Check weights argument
VarCorr | Methods for stapreg objects
VarCorr.stapreg | Methods for stapreg objects
vcov.stapreg | Methods for stapreg objects
waic.stapreg | WAIC