TreeTools-package	TreeTools-package
.CompatibleRaws	CompatibleSplits
.CompatibleSplit	CompatibleSplits
.DecodeBinary	Decoders
.DecodeLastRaw	Decoders
.DecodeRaw	Decoders
.UnrootedKeys	TreeShape
AddTip	AddTip
AddTipEverywhere	AddTip
AllAncestors	AllAncestors
AllDescendantEdges	DescendantEdges
AncestorEdge	AncestorEdge
ApePostorder	Reorder
ApeTime	ApeTime
as.logical.Splits	as.Splits
as.Newick	as.Newick
as.Newick.list	as.Newick
as.Newick.multiPhylo	as.Newick
as.Newick.phylo	as.Newick
as.phylo.numeric	TreeNumber
as.phylo.TreeNumber	TreeNumber
as.Splits	as.Splits
as.Splits.list	as.Splits
as.Splits.logical	as.Splits
as.Splits.multiPhylo	as.Splits
as.Splits.phylo	as.Splits
as.Splits.Splits	as.Splits
as.TreeNumber	TreeNumber
as.TreeNumber.character	TreeNumber
as.TreeNumber.multiPhylo	TreeNumber
as.TreeNumber.phylo	TreeNumber
BalancedTree	BalancedTree
brewer	brewer
CharacterInformation	CharacterInformation
CladeSizes	CladeSizes
Cladewise	Reorder
CollapseEdge	CollapseNode
CollapseNode	CollapseNode
CompatibleSplits	CompatibleSplits
ConsensusWithout	ConsensusWithout
Decoders	Decoders
DescendantEdges	DescendantEdges
DoubleFactorial	DoubleFactorial
doubleFactorials	doubleFactorials
EdgeAncestry	EdgeAncestry
EdgeDistances	EdgeDistances
EnforceOutgroup	EnforceOutgroup
ExtractTaxa	ExtractTaxa
ForestSplits	SplitFrequency
IC1Spr	N1Spr
in.Splits	in.Splits
LnDoubleFactorial	DoubleFactorial
LnDoubleFactorial.int	DoubleFactorial
LnRooted	NRooted
LnRooted.int	NRooted
LnSplitMatchProbability	SplitMatchProbability
LnTreesMatchingSplit	TreesMatchingSplit
LnUnrooted	NRooted
LnUnrooted.int	NRooted
LnUnrootedMult	NRooted
LnUnrootedSplits	NRooted
Lobo.data	Lobo.data
Lobo.phy	Lobo.phy
LogDoubleFactorial	DoubleFactorial
LogDoubleFactorial.int	DoubleFactorial
logDoubleFactorials	logDoubleFactorials
MarkMissing	ConsensusWithout
match.Splits	match.Splits
MatrixToPhyDat	MatrixToPhyDat
MRCA	MRCA
MultiSplitInformation	SplitInformation
N1Spr	N1Spr
NewickTree	NewickTree
Neworder	Neworder
NeworderPhylo	Neworder
NeworderPruningwise	Neworder
NexusTokens	ExtractTaxa
NJTree	NJTree
NonDuplicateRoot	NonDuplicateRoot
NPartitionPairs	NPartitionPairs
NPartitions	NSplits
NRooted	NRooted
NRootedShapes	TreeShape
NSplits	NSplits
NSplits.list	NSplits
NSplits.multiPhylo	NSplits
NSplits.numeric	NSplits
NSplits.phylo	NSplits
NSplits.Splits	NSplits
NTip	NTip
NTip.list	NTip
NTip.multiPhylo	NTip
NTip.phylo	NTip
NTip.Splits	NTip
NUnrooted	NRooted
NUnrootedMult	NRooted
NUnrootedShapes	TreeShape
NUnrootedSplits	NRooted
PectinateTree	PectinateTree
PhyDat	ReadCharacters
PhyDatToMatrix	MatrixToPhyDat
PhyDatToString	PhyToString
PhydatToString	PhyToString
PhyToString	PhyToString
Postorder	Reorder
PostorderEdges	Reorder
Preorder	Reorder
print.TreeNumber	print.TreeNumber
Pruningwise	Reorder
RandomTree	RandomTree
ReadAsPhyDat	ReadCharacters
ReadCharacters	ReadCharacters
ReadTntAsPhyDat	ReadCharacters
ReadTntCharacters	ReadCharacters
ReadTntTree	ReadTntTree
Renumber	Renumber
RenumberEdges	RenumberTree
RenumberTips	RenumberTips
RenumberTips.list	RenumberTips
RenumberTips.multiPhylo	RenumberTips
RenumberTips.phylo	RenumberTips
RenumberTree	RenumberTree
Reorder	Reorder
RightmostCharacter	RightmostCharacter
RootedTreeShape	TreeShape
RootedTreeWithShape	TreeShape
RootOnNode	RootTree
RootTree	RootTree
SampleOne	SampleOne
SingleTaxonTree	SingleTaxonTree
SortTree	SortTree
SplitFrequency	SplitFrequency
SplitInformation	SplitInformation
SplitMatchProbability	SplitMatchProbability
SplitNumber	SplitFrequency
StringToPhyDat	StringToPhyDat
StringToPhydat	StringToPhyDat
Subsplit	Subsplit
Subtree	Subtree
SupportColor	SupportColour
SupportColour	SupportColour
TipLabels	TipLabels
TipLabels.character	TipLabels
TipLabels.default	TipLabels
TipLabels.list	TipLabels
TipLabels.matrix	TipLabels
TipLabels.multiPhylo	TipLabels
TipLabels.numeric	TipLabels
TipLabels.phyDat	TipLabels
TipLabels.phylo	TipLabels
TipLabels.Splits	TipLabels
TipLabels.TreeNumber	TipLabels
TipsInSplits	TipsInSplits
TNTText2Tree	ReadTntTree
TreeIsRooted	TreeIsRooted
TreeNumber	TreeNumber
TreeShape	TreeShape
TreesMatchingSplit	TreesMatchingSplit
TreeSplits	SplitFrequency
TreeTools	TreeTools-package
TrivialSplits	TrivialSplits
UnrootedKeys	TreeShape
UnrootedTreeKey	TreeShape
UnrootedTreeShape	TreeShape
UnrootedTreesMatchingSplit	UnrootedTreesMatchingSplit
UnrootedTreeWithKey	TreeShape
UnrootedTreeWithShape	TreeShape
UnshiftTree	UnshiftTree
WithoutTrivialSplits	TrivialSplits
