Package: TreeTools
Title: Create, Modify and Analyse Phylogenetic Trees
Version: 0.1.4
Authors@R: c(person("Martin R.", 'Smith',
                  email="martin.smith@durham.ac.uk", 
                  role=c("aut", "cre", "cph"), 
                  comment=c(ORCID = "0000-0001-5660-1727")),
               person(given = "Emmanuel", family="Paradis", role = c("cph"),
                  comment = c(ORCID = "0000-0003-3092-2199")),
               person(given = "Klaus", family="Schliep", role = c("cph"),
                  comment = c(ORCID = "0000-0003-2941-0161"))
            )
License: GPL (>= 3)
Copyright: Incorporates C/C++ code from: ape by Emmanuel Paradis;
        phangorn by Klaus Scheip <doi:10.1093/bioinformatics/btq706>
Description: Efficient implementations of functions for the creation, 
  modification and analysis of phylogenetic trees.
  Applications include: generation of trees with specified shapes;
  rooting of trees and extraction of subtrees;
  calculation and depiction of node support;
  calculation of ancestor-descendant relationships;
  import and export of trees from Newick, Nexus (Maddison et al. 1997)
  <doi:10.1093/sysbio/46.4.590>,
  and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
  and
  analysis of partitions and partition information.
URL: https://ms609.github.io/TreeTools/,
        https://github.com/ms609/TreeTools/
BugReports: https://github.com/ms609/TreeTools/issues/
SystemRequirements: C++11
Depends: R (>= 3.4.0), ape (>= 5.0)
Imports: colorspace, phangorn (>= 2.2.1), R.cache
Suggests: knitr, Rcpp, Rdpack, rmarkdown, shiny, testthat
RdMacros: Rdpack
LazyData: true
ByteCompile: true
Encoding: UTF-8
Language: en-GB
LinkingTo: Rcpp
VignetteBuilder: knitr
RoxygenNote: 7.0.2
NeedsCompilation: yes
Packaged: 2020-03-04 15:25:09 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>),
  Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2020-03-04 16:30:05 UTC
Built: R 3.5.2; x86_64-apple-darwin15.6.0; 2020-03-05 09:37:43 UTC; unix
Archs: TreeTools.so.dSYM
