# Time-Course Gene Set Analysis for RNA-Seq Data

## Documentation for package ‘tcgsaseq’ version 1.8.1

- DESCRIPTION file.

## Help Pages

tcgsaseq-package | tcgsaseq: a package to perform Time-course Gene Set Analysis and General Gene-Wise Analysis of RNA-seq data
baduel | Small portion of RNA-seq data from plant physiology study.
baduel_5gs | Small portion of RNA-seq data from plant physiology study.
baduel_gmt | Small portion of RNA-seq data from plant physiology study.
design | Small portion of RNA-seq data from plant physiology study.
dsFDR | Estimating the False Discovery Rate
expr_norm_corr | Small portion of RNA-seq data from plant physiology study.
PBT | PBT gene sets related to kidney transplant
PBT_gmt | PBT gene sets related to kidney transplant
perm_pe | Exact permutation p-values
qAbundanceDist | Gene abundance proportion distribution of RNA-seq data.
sp_weights | Non parametric local heteroscedasticity weights
tcgsaseq | tcgsaseq: a package to perform Time-course Gene Set Analysis and General Gene-Wise Analysis of RNA-seq data
tcgsa_seq | Time-course Gene Set Analysis
varseq | Variance component testing for RNA-seq data analysis
vc_test_asym | Computes variance component test statistic for longitudinal
vc_test_perm | Permutation-based variance component test statistic
voom_weights | Precision weights accounting for heteroscedasticity in RNA-seq count data