# Spatial Dependence: Weighting Schemes, Statistics and Models

## Documentation for package ‘spdep’ version 1.0-2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A B C D E F G H I J K L M N O P Q R S T U V W

## -- A --

aggregate.nb | Aggregate a spatial neighbours object
airdist | Measure distance from plot
anova.sarlm | Comparison of simultaneous autoregressive models
aple | Approximate profile-likelihood estimator (APLE)
aple.mc | Approximate profile-likelihood estimator (APLE) permutation test
aple.plot | Approximate profile-likelihood estimator (APLE) scatterplot
as.data.frame.localmoranex | Exact local Moran's Ii tests
as.data.frame.localmoransad | Saddlepoint approximation of local Moran's Ii tests
as.data.frame.sarlm.pred | Prediction for spatial simultaneous autoregressive linear model objects
as.spam.listw | Spatial neighbour sparse representation
as_dgRMatrix_listw | Interface between Matrix class objects and weights lists
as_dsCMatrix_I | Interface between Matrix class objects and weights lists
as_dsCMatrix_IrW | Interface between Matrix class objects and weights lists
as_dsTMatrix_listw | Interface between Matrix class objects and weights lists
autocov_dist | Distance-weighted autocovariate

## -- B --

bbs | Columbus OH spatial analysis data set
bhicv | Data set with 4 life condition indices of Belo Horizonte region
bptest.sarlm | Breusch-Pagan test for spatial models

## -- C --

can.be.simmed | Spatial weights for neighbours lists
card | Cardinalities for neighbours lists
cell2nb | Generate neighbours list for grid cells
cheb_setup | Spatial regression model Jacobian computations
chkIDs | Control checking of spatial object IDs
choynowski | Choynowski probability map values
coef.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
coef.lagmess | Matrix exponential spatial lag model
coef.sarlm | Access functions for spatial simultaneous autoregressive linear model objects
coef.spautolm | Spatial conditional and simultaneous autoregression model estimation
coef.stsls | Generalized spatial two stage least squares
coerce-method | Interface between Matrix class objects and weights lists
col.gal.nb | Columbus OH spatial analysis data set
COL.nb | Columbus OH spatial analysis data set - old numbering
COL.OLD | Columbus OH spatial analysis data set - old numbering
columbus | Columbus OH spatial analysis data set
complement.nb | Set operations on neighborhood objects
coords | Columbus OH spatial analysis data set
create_WX | Spatial simultaneous autoregressive error model estimation

## -- D --

deviance.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
deviance.lagmess | Matrix exponential spatial lag model
deviance.sarlm | Access functions for spatial simultaneous autoregressive linear model objects
deviance.spautolm | Spatial conditional and simultaneous autoregression model estimation
deviance.stsls | Generalized spatial two stage least squares
df2sn | Use vector files for import and export of weights
diffnb | Differences between neighbours lists
dnearneigh | Neighbourhood contiguity by distance
do_ldet | Spatial regression model Jacobian computations
droplinks | Drop links in a neighbours list

## -- E --

EBest | Global Empirical Bayes estimator
EBImoran | Permutation test for empirical Bayes index
EBImoran.mc | Permutation test for empirical Bayes index
EBlocal | Local Empirical Bayes estimator
edit.nb | Interactive editing of neighbours lists
eigenw | Spatial weights matrix eigenvalues
eigen_pre_setup | Spatial regression model Jacobian computations
eigen_setup | Spatial regression model Jacobian computations
eire | Eire data sets
eire.coords.utm | Eire data sets
eire.df | Eire data sets
eire.nb | Eire data sets
eire.polys.utm | Eire data sets
errorsarlm | Spatial simultaneous autoregressive error model estimation

## -- F --

fitted.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
fitted.lagmess | Matrix exponential spatial lag model
fitted.ME_res | Moran eigenvector GLM filtering
fitted.sarlm | Access functions for spatial simultaneous autoregressive linear model objects
fitted.SFResult | Semi-parametric spatial filtering
fitted.spautolm | Spatial conditional and simultaneous autoregression model estimation

## -- G --

gabrielneigh | Graph based spatial weights
geary | Compute Geary's C
geary.mc | Permutation test for Geary's C statistic
geary.test | Geary's C test for spatial autocorrelation
get.ClusterOption | Options for parallel support
get.coresOption | Options for parallel support
get.listw_is_CsparseMatrix_Option | Control checking of spatial object IDs
get.mcOption | Options for parallel support
get.spChkOption | Control checking of spatial object IDs
get.VerboseOption | Control checking of spatial object IDs
get.ZeroPolicyOption | Control checking of spatial object IDs
globalG.test | Global G test for spatial autocorrelation
GMargminImage | Spatial simultaneous autoregressive error model estimation by GMM
GMerrorsar | Spatial simultaneous autoregressive error model estimation by GMM
graph2nb | Graph based spatial weights
grid2nb | Construct neighbours for a GridTopology
griffith_sone | Spatial weights matrix eigenvalues
gstsls | Spatial simultaneous autoregressive SAC model estimation by GMM

## -- H --

Hausman.test | Likelihood ratio test
Hausman.test.gmsar | Likelihood ratio test
Hausman.test.sarlm | Likelihood ratio test
HPDinterval.lagImpact | Impacts in spatial lag models

## -- I --

impacts | Impacts in spatial lag models
impacts.gmsar | Impacts in spatial lag models
impacts.lagmess | Impacts in spatial lag models
impacts.MCMC_sac_g | Impacts in spatial lag models
impacts.MCMC_sar_g | Impacts in spatial lag models
impacts.MCMC_sem_g | Impacts in spatial lag models
impacts.sarlm | Impacts in spatial lag models
impacts.SLX | Impacts in spatial lag models
impacts.stsls | Impacts in spatial lag models
include.self | Include self in neighbours list
intersect.nb | Set operations on neighborhood objects
intImpacts | Impacts in spatial lag models
invIrM | Compute SAR generating operator
invIrW | Compute SAR generating operator
is.symmetric.glist | Test a neighbours list for symmetry
is.symmetric.nb | Test a neighbours list for symmetry

## -- J --

jacobianSetup | Spatial regression model Jacobian computations
Jacobian_W | Interface between Matrix class objects and weights lists
joincount.mc | Permutation test for same colour join count statistics
joincount.multi | BB, BW and Jtot join count statistic for k-coloured factors
joincount.test | BB join count statistic for k-coloured factors

## -- K --

knearneigh | K nearest neighbours for spatial weights
knn2nb | Neighbours list from knn object

## -- L --

lag.listw | Spatial lag of a numeric vector
lagmess | Matrix exponential spatial lag model
lagsarlm | Spatial simultaneous autoregressive lag model estimation
lee | Compute Lee's statistic
lee.mc | Permutation test for Lee's L statistic
lee.test | Lee's L test for spatial autocorrelation
lextrB | Find extreme eigenvalues of binary symmetric spatial weights
lextrS | Find extreme eigenvalues of binary symmetric spatial weights
lextrW | Find extreme eigenvalues of binary symmetric spatial weights
listw2lines | Use vector files for import and export of weights
listw2mat | Spatial weights matrices for neighbours lists
listw2sn | Spatial neighbour sparse representation
listw2star | Saddlepoint approximation of local Moran's Ii tests
listw2U | Moran's I test for residual spatial autocorrelation
listw2WB | Output spatial weights for WinBUGS
lm.LMtests | Lagrange Multiplier diagnostics for spatial dependence in linear models
lm.morantest | Moran's I test for residual spatial autocorrelation
lm.morantest.exact | Exact global Moran's I test
lm.morantest.sad | Saddlepoint approximation of global Moran's I test
lmSLX | Spatial simultaneous autoregressive error model estimation
localAple | Approximate profile-likelihood estimator (APLE) scatterplot
localG | G and Gstar local spatial statistics
localmoran | Local Moran's I statistic
localmoran.exact | Exact local Moran's Ii tests
localmoran.exact.alt | Exact local Moran's Ii tests
localmoran.sad | Saddlepoint approximation of local Moran's Ii tests
logLik.lagmess | Matrix exponential spatial lag model
logLik.sarlm | Likelihood ratio test
logLik.spautolm | Spatial conditional and simultaneous autoregression model estimation
LOSH | Local spatial heteroscedasticity
LOSH.cs | Chi-square based test for local spatial heteroscedasticity
LOSH.mc | Bootstrapping-based test for local spatial heteroscedasticity
LR.sarlm | Likelihood ratio test
LR1.sarlm | Likelihood ratio test
LR1.spautolm | Spatial conditional and simultaneous autoregression model estimation
LU_prepermutate_setup | Spatial regression model Jacobian computations
LU_setup | Spatial regression model Jacobian computations
l_max | Find extreme eigenvalues of binary symmetric spatial weights

## -- M --

make.sym.nb | Test a neighbours list for symmetry
mat2listw | Convert a square spatial weights matrix to a weights list object
Matrix_J_setup | Spatial regression model Jacobian computations
Matrix_setup | Spatial regression model Jacobian computations
mcdet_setup | Spatial regression model Jacobian computations
MCMCsamp | MCMC sample from fitted spatial regression
MCMCsamp.sarlm | MCMC sample from fitted spatial regression
MCMCsamp.spautolm | MCMC sample from fitted spatial regression
ME | Moran eigenvector GLM filtering
moments_setup | Spatial regression model Jacobian computations
mom_calc | Spatial weights matrix powers traces
mom_calc_int2 | Spatial weights matrix powers traces
moran | Compute Moran's I
moran.mc | Permutation test for Moran's I statistic
moran.plot | Moran scatterplot
moran.test | Moran's I test for spatial autocorrelation
mrc2vi | Generate neighbours list for grid cells
mstree | Find the minimal spanning tree

## -- N --

n.comp.nb | Depth First Search on Neighbor Lists
nb2blocknb | Block up neighbour list for location-less observations
nb2INLA | Output spatial neighbours for INLA
nb2lines | Use vector files for import and export of weights
nb2listw | Spatial weights for neighbours lists
nb2mat | Spatial weights matrices for neighbours lists
nb2WB | Output spatial weights for WinBUGS
nbcost | Compute cost of edges
nbcosts | Compute cost of edges
nbdists | Spatial link distance measures
nblag | Higher order neighbours lists
nblag_cumul | Higher order neighbours lists

## -- O --

old.make.sym.nb | Test a neighbours list for symmetry
oldcol | Columbus OH spatial analysis data set - old numbering

## -- P --

p.adjustSP | Adjust local association measures' p-values
plot.Gabriel | Graph based spatial weights
plot.lagImpact | Impacts in spatial lag models
plot.listw | Plot a neighbours list
plot.mc.sim | Mantel-Hubert spatial general cross product statistic
plot.mst | Plot the Minimum Spanning Tree
plot.nb | Plot a neighbours list
plot.relative | Graph based spatial weights
plot.skater | Plot the object of skater class
plot.spcor | Spatial correlogram
poly2nb | Construct neighbours list from polygon list
polys | Columbus OH spatial analysis data set
powerWeights | Compute SAR generating operator
predict.sarlm | Prediction for spatial simultaneous autoregressive linear model objects
predict.SLX | Prediction for spatial simultaneous autoregressive linear model objects
print.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
print.jclist | BB join count statistic for k-coloured factors
print.jcmulti | BB, BW and Jtot join count statistic for k-coloured factors
print.lagImpact | Impacts in spatial lag models
print.lagmess | Matrix exponential spatial lag model
print.listw | Print and summary function for neighbours and weights lists
print.LMtestlist | Lagrange Multiplier diagnostics for spatial dependence in linear models
print.LMtestlist.summary | Lagrange Multiplier diagnostics for spatial dependence in linear models
print.localmoranex | Exact local Moran's Ii tests
print.localmoransad | Saddlepoint approximation of local Moran's Ii tests
print.ME_res | Moran eigenvector GLM filtering
print.moranex | Exact global Moran's I test
print.moransad | Saddlepoint approximation of global Moran's I test
print.nb | Print and summary function for neighbours and weights lists
print.sarlm | summary method for class sarlm
print.sarlm.pred | Prediction for spatial simultaneous autoregressive linear model objects
print.SFResult | Semi-parametric spatial filtering
print.spautolm | Spatial conditional and simultaneous autoregression model estimation
print.spcor | Spatial correlogram
print.stsls | Generalized spatial two stage least squares
print.summary.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
print.summary.lagImpact | Impacts in spatial lag models
print.summary.lagmess | Matrix exponential spatial lag model
print.summary.localmoransad | Saddlepoint approximation of local Moran's Ii tests
print.summary.moransad | Saddlepoint approximation of global Moran's I test
print.summary.sarlm | summary method for class sarlm
print.summary.spautolm | Spatial conditional and simultaneous autoregression model estimation
print.summary.stsls | Generalized spatial two stage least squares
print.summary.WXImpact | Impacts in spatial lag models
print.WXImpact | Impacts in spatial lag models
probmap | Probability mapping for rates
prunecost | Compute cost of prune each edge
prunemst | Prune a Minimun Spanning Tree

## -- Q --

queencell | Generate neighbours list for grid cells

## -- R --

read.dat2listw | Read and write spatial neighbour files
read.gal | Read a GAL lattice file into a neighbours list
read.geoda | Read a GAL lattice file into a neighbours list
read.gwt2nb | Read and write spatial neighbour files
relativeneigh | Graph based spatial weights
residuals.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
residuals.lagmess | Matrix exponential spatial lag model
residuals.sarlm | Access functions for spatial simultaneous autoregressive linear model objects
residuals.spautolm | Spatial conditional and simultaneous autoregression model estimation
residuals.stsls | Generalized spatial two stage least squares
rookcell | Generate neighbours list for grid cells
Rotation | Rotate a set of point by a certain angle

## -- S --

sacsarlm | Spatial simultaneous autoregressive SAC model estimation
set.ClusterOption | Options for parallel support
set.coresOption | Options for parallel support
set.listw_is_CsparseMatrix_Option | Control checking of spatial object IDs
set.mcOption | Options for parallel support
set.spChkOption | Control checking of spatial object IDs
set.VerboseOption | Control checking of spatial object IDs
set.ZeroPolicyOption | Control checking of spatial object IDs
setdiff.nb | Set operations on neighborhood objects
SE_classic_setup | Spatial regression model Jacobian computations
SE_interp_setup | Spatial regression model Jacobian computations
SE_whichMin_setup | Spatial regression model Jacobian computations
similar.listw | Create symmetric similar weights lists
skater | Spatial 'K'luster Analysis by Tree Edge Removal
sn2listw | Spatial neighbour sparse representation
soi.graph | Graph based spatial weights
sp.correlogram | Spatial correlogram
sp.mantel.mc | Mantel-Hubert spatial general cross product statistic
spam_setup | Spatial regression model Jacobian computations
spam_update_setup | Spatial regression model Jacobian computations
SpatialFiltering | Semi-parametric spatial filtering
spautolm | Spatial conditional and simultaneous autoregression model estimation
spBreg_err | Spatial simultaneous autoregressive error model estimation
spBreg_lag | Spatial simultaneous autoregressive lag model estimation
spBreg_sac | Spatial simultaneous autoregressive SAC model estimation
spdep | Return package version number
spNamedVec | Control checking of spatial object IDs
spweights.constants | Provides constants for spatial weights matrices
ssw | Compute the sum of dissimilarity
stsls | Generalized spatial two stage least squares
subgraph_eigenw | Spatial weights matrix eigenvalues
subset.listw | Subset a spatial weights list
subset.nb | Subset a neighbours list
summary.gmsar | Spatial simultaneous autoregressive error model estimation by GMM
summary.lagImpact | Impacts in spatial lag models
summary.lagmess | Matrix exponential spatial lag model
summary.listw | Print and summary function for neighbours and weights lists
summary.LMtestlist | Lagrange Multiplier diagnostics for spatial dependence in linear models
summary.localmoransad | Saddlepoint approximation of local Moran's Ii tests
summary.moransad | Saddlepoint approximation of global Moran's I test
summary.nb | Print and summary function for neighbours and weights lists
summary.sarlm | summary method for class sarlm
summary.spautolm | Spatial conditional and simultaneous autoregression model estimation
summary.stsls | Generalized spatial two stage least squares
summary.WXImpact | Impacts in spatial lag models
sym.attr.nb | Test a neighbours list for symmetry
Szero | Provides constants for spatial weights matrices

## -- T --

tolerance.nb | Function to construct edges based on a tolerance angle and a maximum distance
tri2nb | Neighbours list from tri object
trW | Spatial weights matrix powers traces

## -- U --

union.nb | Set operations on neighborhood objects

## -- V --

vcov.sarlm | Access functions for spatial simultaneous autoregressive linear model objects
vi2mrc | Generate neighbours list for grid cells

## -- W --

Wald1.sarlm | Likelihood ratio test
write.nb.gal | Write a neighbours list as a GAL lattice file
write.sn2dat | Read and write spatial neighbour files
write.sn2gwt | Read and write spatial neighbour files