Package: r.jive
Type: Package
Title: Perform JIVE Decomposition for Multi-Source Data
Version: 2.1
Date: 2017-04-11
Author: Michael J. O'Connell and Eric F. Lock
Maintainer: Michael J. O'Connell <oconn725@umn.edu>
Description: Performs the JIVE decomposition on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data [O'Connell, MJ and Lock, EF (2016) <doi:10.1093/bioinformatics/btw324>]. It provides two methods of rank selection when the rank is unknown, a permutation test and a BIC selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots. 
License: GPL-3
Imports: SpatioTemporal, gplots, abind, graphics, stats
Suggests: knitr, rmarkdown
Depends: R(>= 2.10.0)
VignetteBuilder: knitr
Packaged: 2017-04-12 02:12:35 UTC; Eric
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2017-04-12 13:41:29 UTC
Built: R 3.4.0; ; 2017-04-20 20:57:10 UTC; unix
