mizer-package	mizer
addSpecies	addSpecies
addSpecies,MizerParams-method	addSpecies
display_frames	display_frames
getBiomass	getBiomass
getBiomass,MizerSim-method	getBiomass
getBiomassFrame	getBiomassFrame
getBiomassFrame,MizerSim-method	getBiomassFrame
getCommunitySlope	getCommunitySlope
getCommunitySlope,MizerSim-method	getCommunitySlope
getEGrowth	getEGrowth
getEGrowth,MizerParams,matrix,numeric,matrix,matrix-method	getEGrowth
getEGrowth,MizerParams,matrix,numeric,missing,missing-method	getEGrowth
getEReproAndGrowth	getEReproAndGrowth
getEReproAndGrowth,MizerParams,matrix,numeric,matrix-method	getEReproAndGrowth
getEReproAndGrowth,MizerParams,matrix,numeric,missing-method	getEReproAndGrowth
getESpawning	getESpawning
getESpawning,MizerParams,matrix,numeric,matrix-method	getESpawning
getESpawning,MizerParams,matrix,numeric,missing-method	getESpawning
getFeedingLevel	getFeedingLevel
getFeedingLevel,MizerParams,matrix,numeric,matrix-method	getFeedingLevel
getFeedingLevel,MizerParams,matrix,numeric,missing-method	getFeedingLevel
getFeedingLevel,MizerSim,missing,missing,missing-method	getFeedingLevel
getFMort	getFMort
getFMort,MizerParams,matrix-method	getFMort
getFMort,MizerParams,numeric-method	getFMort
getFMort,MizerSim,missing-method	getFMort
getFMortGear	getFMortGear
getFMortGear,MizerParams,matrix-method	getFMortGear
getFMortGear,MizerParams,numeric-method	getFMortGear
getFMortGear,MizerSim,missing-method	getFMortGear
getM2	getM2
getM2,MizerParams,matrix,numeric,missing-method	getM2
getM2,MizerParams,missing,missing,array-method	getM2
getM2,MizerSim,missing,missing,missing-method	getM2
getM2Background	getM2Background
getM2Background,MizerParams,matrix,numeric,array-method	getM2Background
getM2Background,MizerParams,matrix,numeric,missing-method	getM2Background
getMeanMaxWeight	getMeanMaxWeight
getMeanMaxWeight,MizerSim-method	getMeanMaxWeight
getMeanWeight	getMeanWeight
getMeanWeight,MizerSim-method	getMeanWeight
getN	getN
getN,MizerSim-method	getN
getPhiPrey	getPhiPrey
getPhiPrey,MizerParams,matrix,numeric-method	getPhiPrey
getPredRate	getPredRate
getPredRate,MizerParams,matrix,numeric,matrix-method	getPredRate
getPredRate,MizerParams,matrix,numeric,missing-method	getPredRate
getProportionOfLargeFish	getProportionOfLargeFish
getProportionOfLargeFish,MizerSim-method	getProportionOfLargeFish
getRDD	getRDD
getRDD,MizerParams,matrix,numeric,matrix-method	getRDD
getRDD,MizerParams,matrix,numeric,missing-method	getRDD
getRDI	getRDI
getRDI,MizerParams,matrix,numeric,matrix-method	getRDI
getRDI,MizerParams,matrix,numeric,missing-method	getRDI
getSSB	getSSB
getSSB,MizerSim-method	getSSB
getSSBFrame	getSSBFrame
getSSBFrame,MizerSim-method	getSSBFrame
getYield	getYield
getYield,MizerSim-method	getYield
getYieldGear	getYieldGear
getYieldGear,MizerSim-method	getYieldGear
getZ	getZ
getZ,MizerParams,matrix,numeric,numeric,matrix-method	getZ
getZ,MizerParams,matrix,numeric,numeric,missing-method	getZ
get_initial_n	get_initial_n
inter	inter
knife_edge	knife_edge
log_breaks	log_breaks
mizer	mizer
mizer,	mizer
MizerParams	MizerParams
MizerParams,data.frame,matrix-method	MizerParams
MizerParams,data.frame,missing-method	MizerParams
MizerParams,numeric,missing-method	MizerParams
MizerParams-class	MizerParams-class
MizerSim	MizerSim
MizerSim,MizerParams-method	MizerSim
MizerSim-class	MizerSim-class
NS_species_params	NS_species_params
NS_species_params_gears	NS_species_params_gears
plot,MizerSim,missing-method	plotMizerSim
plotBiomass	plotBiomass
plotBiomass,MizerSim-method	plotBiomass
plotFeedingLevel	plotFeedingLevel
plotFeedingLevel,MizerSim-method	plotFeedingLevel
plotFMort	plotFMort
plotFMort,MizerSim-method	plotFMort
plotGrowthCurves	plotGrowthCurves
plotGrowthCurves,MizerParams-method	plotGrowthCurves
plotGrowthCurves,MizerSim-method	plotGrowthCurves
plotM2	plotM2
plotM2,MizerSim-method	plotM2
plotSpectra	plotSpectra
plotSpectra,MizerParams-method	plotSpectra
plotSpectra,MizerSim-method	plotSpectra
plotYield	plotYield
plotYield,MizerSim,missing-method	plotYield
plotYield,MizerSim,MizerSim-method	plotYield
plotYieldGear	plotYieldGear
plotYieldGear,MizerSim-method	plotYieldGear
project	project
project,MizerParams,array-method	project
project,MizerParams,missing-method	project
project,MizerParams,numeric-method	project
project_methods	project_methods
retune_abundance	retune_abundance
setBackground	setBackground
setBackground,MizerParams-method	setBackground
setBackground,MizerSim-method	setBackground
set_community_model	set_community_model
set_scaling_model	set_scaling_model
set_trait_model	set_trait_model
sigmoid_length	sigmoid_length
steady	steady
summary,MizerParams-method	summary-MizerParams-method
summary,MizerSim-method	summary-MizerSim-method
wrapper_functions	wrapper_functions
