# R Analysis package for iDynoMiCS Simulation Results

## Documentation for package ‘iDynoR’ version 1.0

- DESCRIPTION file.

## Help Pages

agent_getMeasureOverTime | Technique 3: Example Methods for Processing Agent Information
agent_returnGridResolution | Technique 2: Reading Agent State and Agent Sum Files
agent_returnIVoxels | Technique 2: Reading Agent State and Agent Sum Files
agent_returnJVoxels | Technique 2: Reading Agent State and Agent Sum Files
agent_returnKVoxels | Technique 2: Reading Agent State and Agent Sum Files
agent_returnNumSpecies | Technique 2: Reading Agent State and Agent Sum Files
agent_returnSimIteration | Technique 2: Reading Agent State and Agent Sum Files
agent_returnSimTime | Technique 2: Reading Agent State and Agent Sum Files
agent_returnSpeciesColumnTotal | Technique 2: Reading Agent State and Agent Sum Files
agent_returnSpeciesResultData | Technique 2: Reading Agent State and Agent Sum Files
env_returnConcentrationAndRateChange | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnGlobalProductionRates | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnMaxBiofilmThickness | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnMeanBiofilmThickness | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSimIteration | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSimTime | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridIVoxels | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridJVoxels | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridKVoxels | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSoluteGridRes | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnSpecifiedSoluteData | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_returnStdDevBiofilmThickness | Technique 4: Reading Solute Grid State (env_State) and Summary (env_Sum) Files
env_soluteProductionRateOverTime | Technique 5: Example Methods for Processing Solute Information
getSpeciesAbundance | Technique 3: Example Methods for Processing Agent Information
getSpeciesSpecificAbundance | Technique 3: Example Methods for Processing Agent Information
plotAgents | Technique 3: Example Methods for Processing Agent Information
plotContour | Technique 5: Example Methods for Processing Solute Information
plotTimeCourseAbund | Technique 3: Example Methods for Processing Agent Information
plotTimeCourseAgents | Technique 3: Example Methods for Processing Agent Information
readSimResultFile | Technique 1: Read in Simulation Results
simpsonIndex | Technique 3: Example Methods for Processing Agent Information