assignMutations	assignMutations
assignQuantityToMutation	assignQuantityToMutation
assignQuantityToSP	assignQuantityToSP
buildMultiSamplePhylo	buildMultiSamplePhylo
buildPhylo	buildPhylo
cbs	cbs
cellfrequency_pdf	cellfrequency_pdf
clusterCellFrequencies	clusterCellFrequencies
computeCellFrequencyDistributions	computeCellFrequencyDistributions
gatherEXPANDSoutput	gatherEXPANDSoutput
plotSPs	plotSPs
roi	roi
runExPANdS	runExPANdS
simulation	simulation
snv	snv
