# The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.

## Documentation for package ‘PAGI’ version 1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

CalGIF | Calculate the global influence factor (GIF)
class.labels | The variables in the environment variable ExampleData of the system
dataset | The variables in the environment variable ExampleData of the system
ExampleData | The variables in the environment variable ExampleData of the system
getclass.labels | Get the labels of example dataset
getdataset | Get the example dataset
netWorkdata | The variables in the environment variable PAGIData of the system
PAGI.Main | A novel pathway identification approach based on global influence from both the internal effect of pathways and crosstalk between pathways
PAGIData | The variables in the environment variable PAGIData of the system
pathway.db | The variables in the environment variable PAGIData of the system