# Variable Selection in Clustering by Mixture Models for Discrete Data

## Documentation for package ‘ClustMMDD’ version 1.0.4

- DESCRIPTION file.

## Help Pages

ClustMMDD-package | 'ClustMMDD' : Clustering by Mixture Models for Discrete Data.
== | Methods for Function '=='
==-method | 'modelKS' is a class of parameters of (K, S) model.
==-methods | Methods for Function '=='
backward.explorer | Gather a set of the most competitive models.
bar | Functions and Objects created by Rcpp Modules Example
bla | Functions and Objects created by Rcpp Modules Example
bla1 | Functions and Objects created by Rcpp Modules Example
bla2 | Functions and Objects created by Rcpp Modules Example
C++Object-class | Functions and Objects created by Rcpp Modules Example
ClustMMDD | 'ClustMMDD' : Clustering by Mixture Models for Discrete Data.
cutEachCol | Retrieve data from strings in the dataset.
dataR2C | Transform a (normal) data frame to be compatible with 'ClustMMDD' main functions
dimJump.R | Data driven calibration of the penalty function
em.cluster.R | Compute estimates of the parameters by Expectation and Maximization algorithm.
EmOptions | Display the current Expectation and Maximization options.
exModelKS | An example of 'modelKS'.
foo | Functions and Objects created by Rcpp Modules Example
genotype1 | 'genotype1' is a data frame of genotype data with 'ploidy = 2.'
genotype2 | A genotype data frame compatible with 'ClustMMDD' main functions.
genotype2_ExploredModels | A data frame of competing models gathered by 'backward.explorer'.
hello | Functions and Objects created by Rcpp Modules Example
is.element | Check if a 'modelKS' object is in a set of such objects.
is.element-method | 'modelKS' is a class of parameters of (K, S) model.
is.element-methods | Check if a 'modelKS' object is in a set of such objects.
is.modelKS | Is an object from class 'modelKS'?
is.modelKS-method | 'modelKS' is a class of parameters of (K, S) model.
is.modelKS-methods | Is an object from class 'modelKS'?
isInFile.R | Find a model in a file.
model | Retrieve a list of model <=ft(K,S\right) from a 'modelKS' object.
model-method | 'modelKS' is a class of parameters of (K, S) model.
model-methods | Retrieve a list of model <=ft(K,S\right) from a 'modelKS' object.
model.selection.R | Selection of both the number K of clusters and the subset S of clustering variables.
modelKS-class | 'modelKS' is a class of parameters of (K, S) model.
Num | Functions and Objects created by Rcpp Modules Example
Rcpp_Num-class | Functions and Objects created by Rcpp Modules Example
Rcpp_vec-class | Functions and Objects created by Rcpp Modules Example
Rcpp_World-class | Functions and Objects created by Rcpp Modules Example
read.modelKS | Read the parameters of a model <=ft(K,S\right) from a file.
read.modelKS-method | 'modelKS' is a class of parameters of (K, S) model.
read.modelKS-methods | Read the parameters of a model <=ft(K,S\right) from a file.
read.or.compute | Read a given model from a file or compute the estimates of paramaters if not found.
selectK.R | Selection of the number K of clusters.
setEmOptions | Set Expectation and Maximization options.
setModelKS,list-methods | Set an instance of class 'modelKS' from a list.
setModelKS-methods,list-methods | Set an instance of class 'modelKS' from a list.
show | 'show' method for an object of class 'modelKS'
show-method | 'modelKS' is a class of parameters of (K, S) model.
show-methods | 'show' method for an object of class 'modelKS'
simulData | Simulate a dataset from a given set of parameters in an instance of 'modelKS'.
simulData-method | 'modelKS' is a class of parameters of (K, S) model.
simulData-methods | Simulate a dataset from a given set of parameters in an instance of 'modelKS'.
vec | Functions and Objects created by Rcpp Modules Example
World | Functions and Objects created by Rcpp Modules Example
[ | Get a slot from 'modelKS'.
[-method | 'modelKS' is a class of parameters of (K, S) model.
[-methods | Get a slot from 'modelKS'.
[<- | Get or set a slot from 'modelKS'.
[<--method | 'modelKS' is a class of parameters of (K, S) model.
[<--methods | Get or set a slot from 'modelKS'.