Package: popkin
Title: Estimate Kinship and FST under Arbitrary Population Structure
Version: 1.3.8
Authors@R: c(
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = c("aut"),
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index).  Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 0.12.10), RColorBrewer, graphics, grDevices
LinkingTo: Rcpp, RcppEigen
Suggests: BEDMatrix, testthat, knitr, rmarkdown, lfa, bnpsd
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
URL: https://github.com/StoreyLab/popkin/
BugReports: https://github.com/StoreyLab/popkin/issues
NeedsCompilation: yes
Packaged: 2021-02-11 02:40:42 UTC; viiia
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Repository: CRAN
Date/Publication: 2021-02-11 14:10:03 UTC
Built: R 4.0.2; x86_64-apple-darwin17.0; 2021-02-12 11:39:54 UTC; unix
Archs: popkin.so.dSYM
