# Simulate Expression Data from 'igraph' Networks

## Documentation for package ‘graphsim’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

graphsim-package | The graphsim package
generate_expression | Generate Simulated Expression
generate_expression_mat | Generate Simulated Expression
graphsim | The graphsim package
make_adjmatrix | Generate Adjacency Matrix
make_adjmatrix_graph | Generate Adjacency Matrix
make_commonlink | Generate Common Link Matrix
make_commonlink_adjmat | Generate Common Link Matrix
make_commonlink_graph | Generate Common Link Matrix
make_distance | Generate Distance Matrix
make_distance_adjmat | Generate Distance Matrix
make_distance_comm | Generate Distance Matrix
make_distance_graph | Generate Distance Matrix
make_distance_laplacian | Generate Distance Matrix
make_laplacian | Generate Laplacian Matrix
make_laplacian_adjmat | Generate Laplacian Matrix
make_laplacian_graph | Generate Laplacian Matrix
make_relationship | Generate Distance Matrix
make_sigma | Generate Sigma (Sigma) Matrix
make_sigma_mat_adjmat | Generate Sigma (Sigma) Matrix
make_sigma_mat_comm | Generate Sigma (Sigma) Matrix
make_sigma_mat_dist_adjmat | Generate Sigma (Sigma) Matrix
make_sigma_mat_dist_graph | Generate Sigma (Sigma) Matrix
make_sigma_mat_graph | Generate Sigma (Sigma) Matrix
make_sigma_mat_laplacian | Generate Sigma (Sigma) Matrix
make_state | Make State Matrix
make_state_matrix | Make State Matrix
Pi3K_AKT_graph | PI3K/AKT activation
Pi3K_graph | PI3K Cascade
plot.directed | Extensions to igraph for Customising plots
plot_directed | Extensions to igraph for Customising plots
RAF_MAP_graph | #' RAF/MAP kinase cascade
TGFBeta_Smad_graph | TGF-beta receptor signaling activates SMADs