Package: TreeTools
Title: Create, Modify and Analyse Phylogenetic Trees
Version: 1.4.2
Authors@R: c(
  person("Martin R.", 'Smith', role = c("aut", "cre", "cph"), 
         email = "martin.smith@durham.ac.uk",
         comment = c(ORCID = "0000-0001-5660-1727")),
  person(given = "Emmanuel", family = "Paradis", role = c("cph"),
         comment = c(ORCID = "0000-0003-3092-2199"))
  )
License: GPL (>= 3)
Copyright: Incorporates C/C++ code from 'ape' by Emmanuel Paradis
        <doi:10.1093/bioinformatics/bty633>
Description: Efficient implementations of functions for the creation, 
  modification and analysis of phylogenetic trees.
  Applications include:
  generation of trees with specified shapes;
  analysis of tree shape;
  rooting of trees and extraction of subtrees;
  calculation and depiction of node support;
  calculation of ancestor-descendant relationships;
  import and export of trees from Newick, Nexus (Maddison et al. 1997)
  <doi:10.1093/sysbio/46.4.590>,
  and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
  and analysis of splits and cladistic information.
URL: https://ms609.github.io/TreeTools/,
        https://github.com/ms609/TreeTools/
BugReports: https://github.com/ms609/TreeTools/issues/
SystemRequirements: C++14
Depends: R (>= 3.4.0), ape (>= 5.0)
Imports: bit64, colorspace, phangorn (>= 2.2.1), R.cache, Rdpack
Suggests: knitr, Rcpp, rmarkdown, shiny, testthat, vdiffr
LinkingTo: Rcpp
RdMacros: Rdpack
LazyData: true
ByteCompile: true
Encoding: UTF-8
Language: en-GB
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2021-01-26 15:57:31 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2021-01-26 18:20:03 UTC
Built: R 4.0.2; x86_64-apple-darwin17.0; 2021-01-27 11:50:29 UTC; unix
Archs: TreeTools.so.dSYM
