# Revealing Splicing Dynamics at Single-Cell Resolution

## Documentation for package ‘MARVEL’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AssignModality | Modality Assignment
BioPathways | Gene Ontology Analysis
CompareValues | Differential Splicing and Gene Expression Analysis
CompareValues.Exp | Differential Gene Expression Analysis
CompareValues.PSI | Differential splicing analysis
ComputePSI | Compute Percent Spliced-in (PSI) Values
ComputePSI.A3SS | Compute Alternative 3' Splice Site (A3SS) Percent Spliced-in (PSI) Values
ComputePSI.A5SS | Compute Alternative 5' Splice Site (A5SS) Percent Spliced-in (PSI) Values
ComputePSI.MXE | Compute Mutually Exclusive Exons (MXE) Percent Spliced-in (PSI) Values
ComputePSI.RI | Compute Retained-intron (RI) Percent Spliced-in (PSI) Values
ComputePSI.SE | Compute Skipped-exon (SE) Percent Spliced-in (PSI) Values
CreateMarvelObject | Create Marvel Object
IsoSwitch | Detect Isoform Switch
ModalityChange | Classify Modality Changes
PlotValues | Plot Percent Spliced-in (PSI) and Gene Expression Values
PlotValues.Exp | Plot Gene Expression Values
PlotValues.PSI | Plot Percent Spliced-in (PSI) Values
PropModality | Modality Proportion
PropModality.Bar | Modality Proportion across Event Types.
PropModality.Doughnut | Modality Proportion for a Given Event Type(s).
RunPCA | Principle Component Analysis
RunPCA.Exp | Principle Component Analysis on Gene Expression Values
RunPCA.PSI | Principle Component Analysis on Percent Spliced-in (PSI) Values