# Comprehensive and Easy to Use Quality Control of GWAS Results

## Documentation for package ‘GWASinspector’ version 1.5.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

compare.GWASs | Compare summary statistics of GWAS result files
demo.inspector | Runs an example QC
get.config | Copies the template configuration file to the local machine
get.headerTranslation | Copies the template header translation table to the local machine
GWASinspector | Comprehensive and Easy to Use Quality Control of GWAS Results
Inspector | An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.
Inspector-class | An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.
manhattan.plot | Creates the Manhattan plot
result.inspector | Displays a brief report after running the QC pipeline
run.inspector | Runs the QC pipeline on a set of GWAS result files
setup.inspector | Importing a configuration file into R for setting the pipeline parameters
Study | An S4 class to represent an inspected GWAS study result file.
Study-class | An S4 class to represent an inspected GWAS study result file.
StudyList | An S4 class to represent a list of inspected GWAS study result files.
StudyList-class | An S4 class to represent a list of inspected GWAS study result files.
system.check | Checks which required and optional packages are available