# Genomic Annotation in Livestock for Positional Candidate LOci

## Documentation for package ‘GALLO’ version 1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

find_genes_qtls_around_markers | Search genes and QTLs around candidate regions
import_gff_gtf | Import .gtf and .gff files to be used during gene and QTL annotation, respectively
overlapping_among_groups | Overlapping between grouping factors
plot_overlapping | Plot overlapping between data and grouping factors
plot_qtl_info | Plot QTLs information from the find_genes_qtls_around_markers output
QTLenrich_plot | Plot enrichment results for QTL enrichment analysis
qtl_enrich | Performs a QTL enrichment analysis based in a Bootstrap simulation for each QTL class
relationship_plot | Plot relationship between data and grouping factors