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@inproceedings{Nguyen2020EFT,
	Author = {Hien H. Nguyen and Hua Zhong and Mingzhou Song},
	Booktitle = {International Joint Conference on Artificial Intelligence},
	Date-Added = {2020-04-23 22:12:29 -0600},
	Date-Modified = {2020-04-23 22:16:20 -0600},
	Note = {Accepted},
	Title = {Optimality, accuracy, and effciiency of an exact functional test},
	Year = {2020}}

@book{Box2005,
	Address = {New York},
	Author = {Box, G. E. and Hunter, J. S. and Hunter, W. G.},
	Edition = {2nd},
	Publisher = {Wiley-Interscience},
	Title = {Statistics for Experimenters: Design, Innovation and Discovery},
	Year = {2005}}

@article{zhang2013deciphering,
	Author = {Yang Zhang and Mingzhou Song},
	Journal = {arXiv Molecular Networks},
	Pages = {arXiv:1311.2707},
	Title = {Deciphering interactions in causal networks without parametric assumptions},
	Url = {https://arxiv.org/abs/1311.2707},
	Year = {2013},
	Bdsk-Url-1 = {https://arxiv.org/abs/1311.2707}}

@phdthesis{zhang2014nonparametric,
	Address = {Las Cruces, NM, USA},
	Author = {Yang Zhang},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Nonparametric Statistical Methods for Biological Network Inference},
	Year = {2014}}

@phdthesis{nguyen2018modelfree,
	Address = {Las Cruces, NM, USA},
	Author = {Hien H. Nguyen},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Inference of Functional Dependency via Asymmetric, Optimal, and Model-free Statistics},
	Year = {2018}}

@phdthesis{zhong2019modelfree,
	Address = {Las Cruces, NM, USA},
	Author = {Hua Zhong},
	School = {Department of Computer Science, New Mexico State University},
	Title = {Model-free Gene-to-zone Network Inference of Molecular Mechanisms in Biology},
	Year = {2019}}

@article{zhong2019eft,
	Author = {Hua Zhong and Mingzhou Song},
	Doi = {10.1109/TCBB.2018.2809743},
	Journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
	Number = {3},
	Pages = {818--826},
	Title = {A fast exact functional test for directional association and cancer biology applications},
	Volume = {16},
	Year = {2019a},
	Bdsk-Url-1 = {https://doi.org/10.1109/TCBB.2018.2809743}}

@article{song2014hunting,
	Author = {Mingzhou Song and Yang Zhang and Alexia J Katzaroff and Bruce A Edgar and Laura Buttitta},
	Doi = {10.1093/nar/gku086},
	Journal = {Nucleic Acids Research},
	Number = {7},
	Pages = {e57},
	Title = {Hunting complex differential gene interaction patterns across molecular contexts},
	Volume = {42},
	Year = {2014},
	Bdsk-Url-1 = {https://doi.org/10.1093/nar/gku086}}

@article{zhang2015chinet,
	Author = {Yang Zhang and Z Lewis Liu and Mingzhou Song},
	Doi = {10.1093/nar/gkv358},
	Journal = {Nucleic Acids Research},
	Number = {9},
	Pages = {4393--4407},
	Title = {{ChiNet} uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion},
	Volume = {43},
	Year = {2015},
	Bdsk-Url-1 = {https://doi.org/10.1093/nar/gkv358}}

@article{sharma2017simulating,
	Author = {Ruby Sharma and Sajal Kumar and Hua Zhong and Mingzhou Song},
	Doi = {10.32614/RJ-2017-053},
	Journal = {The R Journal},
	Number = {2},
	Pages = {366--377},
	Title = {Simulating noisy, nonparametric, and multivariate discrete patterns},
	Volume = {9},
	Year = {2017},
	Bdsk-Url-1 = {https://doi.org/10.32614/RJ-2017-053}}

@inproceedings{KumarZSLS18,
	Address = {Madrid, Spain},
	Author = {Sajal Kumar and Hua Zhong and Ruby Sharma and Yiyi Li and Mingzhou Song},
	Booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine},
	Doi = {10.1109/BIBM.2018.8621502},
	Pages = {185--190},
	Title = {Scrutinizing functional interaction networks from {RNA}-binding proteins to their targets in cancer},
	Year = {2018},
	Bdsk-Url-1 = {https://doi.org/10.1109/BIBM.2018.8621502}}

@article{Zhong2019FANTOM5,
	Author = {Hua Zhong and Mingzhou Song},
	Doi = {10.1186/s12920-019-0565-9},
	Journal = {BMC Med Genomics},
	Number = {7},
	Pages = {129},
	Title = {Directional association test reveals high-quality putative cancer driver biomarkers including noncoding {RNA}s},
	Volume = {12},
	Year = {2019b},
	Bdsk-Url-1 = {https://doi.org/10.1186/s12920-019-0565-9}}

@article{Hill:2016fk,
	Author = {Hill, Steven M and Heiser, Laura M and Cokelaer, Thomas and Unger, Michael and Nesser, Nicole K and Carlin, Daniel E and Zhang, Yang and Sokolov, Artem and Paull, Evan O and Wong, Chris K and Graim, Kiley and Bivol, Adrian and Wang, Haizhou and Zhu, Fan and Afsari, Bahman and Danilova, Ludmila V and Favorov, Alexander V and Lee, Wai Shing and Taylor, Dane and Hu, Chenyue W and Long, Byron L and Noren, David P and Bisberg, Alexander J and {The HPN-DREAM Consortium} and Mills, Gordon B and Gray, Joe W and Kellen, Michael and Norman, Thea and Friend, Stephen and Qutub, Amina A and Fertig, Elana J and Guan, Yuanfang and Song, Mingzhou and Stuart, Joshua M and Spellman, Paul T and Koeppl, Heinz and Stolovitzky, Gustavo and Saez-Rodriguez, Julio and Mukherjee, Sach},
	Doi = {10.1038/nmeth.3773},
	Journal = {Nat Methods},
	Pages = {310--318},
	Title = {Inferring causal molecular networks: empirical assessment through a community-based effort.},
	Volume = {13},
	Year = {2016},
	Bdsk-Url-1 = {https://doi.org/10.1038/nmeth.3773}}

@article{Simon1966,
	Author = {Simon, H. A. and Rescher, N.},
	Journal = {Philosophy of Science},
	Number = 4,
	Pages = {323--340},
	Title = {Cause and counterfactual},
	Volume = 33,
	Year = {1966}}
