# Read Stable Isotope Data Files

## Documentation for package ‘isoreader’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

E I M P R S V

## -- E --

extract_data | Overview of text data extraction functions
extract_substring | Extract a substring from text
extract_word | Extract words from text

## -- I --

isoread | Read isotope data file
iso_add_file_info | Add additional file information
iso_add_file_info.data.frame | Add additional file information
iso_add_file_info.iso_file_list | Add additional file information
iso_as_file_list | Isoreader data structure functions
iso_caching | Turn caching on/off
iso_calculate_ratios | moved to isoprocessor
iso_cleanup_reader_cache | Cleanup cached files
iso_convert_signals | moved to isoprocessor
iso_convert_time | moved to isoprocessor
iso_debug_mode | Debugging functions
iso_double_with_units | Generate values with units
iso_expand_paths | Expand file paths
iso_export_to_excel | Export data to Excel
iso_export_to_feather | Export to feather
iso_filter_files | Filter iso_files
iso_filter_files_with_problems | Filter out problematic files
iso_find_absolute_path_roots | Find roots for absolute paths
iso_format | Format values
iso_get_all_data | Aggregate all isofiles data
iso_get_bgrd_data | Aggregate background data
iso_get_data | DEPRECATED
iso_get_data_summary | Get data summary
iso_get_default_reader_parameters | Get the current default parameters
iso_get_file_info | Aggregate file info
iso_get_problems | Retrieve parsing problems
iso_get_problems_summary | Retrieve a summary of the problems
iso_get_raw_data | Aggregate raw data
iso_get_reader_example | Example files
iso_get_reader_examples | Example files
iso_get_reader_examples_folder | Example files
iso_get_resistors | Aggregate resistors from methods info
iso_get_resistors_info | DEPRECATED
iso_get_standards | Aggregate standards from methods info
iso_get_standards_info | DEPRECATED
iso_get_supported_file_types | Supported file types
iso_get_units | Retrieve number units
iso_get_vendor_data_table | Aggregate vendor computed table data
iso_has_problems | Check for parsing problems
iso_info_messages | Control information messages
iso_is_continuous_flow | Isoreader data structure functions
iso_is_double_with_units | Check if a value has units
iso_is_dual_inlet | Isoreader data structure functions
iso_is_file | Isoreader data structure functions
iso_is_file_list | Isoreader data structure functions
iso_is_object | Isoreader data structure functions
iso_is_scan | Isoreader data structure functions
iso_make_units_explicit | Make units explicit
iso_make_units_implicit | Make units implicit
iso_mutate_file_info | Mutate file info
iso_omit_files_with_problems | Renamed to iso_filter_files_with_problems
iso_parse_file_info | Parse file info
iso_plot_continuous_flow_data | moved to isoprocessor
iso_plot_dual_inlet_data | moved to isoprocessor
iso_plot_raw_data | moved to isoprocessor
iso_problem_functions | Problem Functions Overview
iso_read_continuous_flow | Load continuous flow data
iso_read_dual_inlet | Load dual inlet data
iso_read_files | Core function to read isotope data files
iso_read_scan | Load scan data
iso_register_continuous_flow_file_reader | Register file readers
iso_register_dual_inlet_file_reader | Register file readers
iso_register_scan_file_reader | Register file readers
iso_rename_file_info | Rename file info columns
iso_reread_all_files | Re-read iso_files
iso_reread_archive | Re-read iso_files
iso_reread_changed_files | Re-read iso_files
iso_reread_files | Re-read iso_files
iso_reread_outdated_files | Re-read iso_files
iso_reread_problem_files | Re-read iso_files
iso_reread_storage | Re-read iso_files
iso_root_paths | Root paths
iso_save | Save data to R Data Storage (.rds)
iso_select_file_info | Select file info columns
iso_set_default_read_parameters | Set default read options
iso_set_file_root | Set iso file directory root
iso_shorten_relative_paths | Shorten relative paths
iso_strip_units | Strip units from variables
iso_turn_datetime_warnings_off | Control information messages
iso_turn_datetime_warnings_on | Control information messages
iso_turn_debug_off | Debugging functions
iso_turn_debug_on | Debugging functions
iso_turn_info_messages_off | Control information messages
iso_turn_info_messages_on | Control information messages
iso_turn_reader_caching_off | Turn caching on/off
iso_turn_reader_caching_on | Turn caching on/off
iso_with_units | Generate values with units

## -- M --

map_binary_structure | Map isodat file binary structure.

## -- P --

print.binary_structure_map | Print binary structure map
print.continuous_flow | Isofile printing
print.dual_inlet | Isofile printing
print.iso_file | Isofile printing
print.iso_file_list | Isofile printing
print.scan | Isofile printing

## -- R --

read_iso_file | Read individual iso file
reread_iso_files | Re-read iso_files

## -- S --

set_finish_file_event_expr | Debugging functions
set_read_file_event_expr | Debugging functions
set_temp | Set temporary option

## -- V --

vec_arith.iso_double_with_units | vec_arith for iso_double_with_units
vec_cast.iso_double_with_units | vec_cast for iso_double_with_units
vec_ptype2.iso_double_with_units | vec_ptype2 for iso_double_with_units