# Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures

## Documentation for package ‘PhyloMeasures’ version 2.1

- DESCRIPTION file.

## Help Pages

PhyloMeasures-package | PhyloMeasures: Fast Computations of Phylogenetic Biodiversity Measures
cac.moments | Computes the statistical moments of the Core Ancestor Cost measure
cac.pvalues | Computes the p-values of the Core Ancestor Cost measure
cac.query | Computes the (standardized) value of the Core Ancestor Cost measure
cbl.moments | Computes the moments of the Common Branch Length measure under the uniform null model
cbl.query | Computes the (standardized) value of the Common Branch Length measure
cd.moments | Computes the moments of the Community Distance measure under the uniform null model
cd.query | Computes the (standardized) value of the Community Distance measure
cdnt.averaged.query | Computes the value of the averaged Community Distance Nearest Taxon measure
cdnt.directed.query | Computes the value of the directed Community Distance Nearest Taxon measure
cdnt.query | Computes the value of the maximised Community Distance Nearest Taxon measure
mntd.moments | Computes the moments of the Mean Nearest Taxon Distance measure
mntd.pvalues | Computes the p-values of the Mean Nearest Taxon Distance measure
mntd.query | Computes the (standardized) value of the Mean Nearest Taxon Distance measure
mpd.moments | Computes the moments of the Mean Pairwise Distance measure
mpd.pvalues | Computes the p-values of the Mean Pairwise Distance measure
mpd.query | Computes the (standardized) value of the Mean Pairwise Distance measure
pd.moments | Computes the moments of the Phylogenetic Diversity measure
pd.pvalues | Computes the p-values of the unrooted Phylogenetic Diversity measure
pd.query | Computes the (standardized) value of the unrooted Phylogenetic Diversity measure
PhyloMeasures | PhyloMeasures: Fast Computations of Phylogenetic Biodiversity Measures
phylosor.query | Computes the value of the Phylogenetic Sorensen's Similarity measure
unifrac.query | Computes the value of the Unique Fraction measure