# Clustering and Classification using Model-Based Mixture Models

## Documentation for package ‘MixAll’ version 1.5.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

B C D E G H I K L M P S misc

MixAll-package | MixAll Allows to estimate parametric mixture models with mixed data sets and missing data.

## -- B --

birds | Qualitative data : morphological description of birds
bullsEye | Quantitative Data: bullsEye
bullsEye.cat | label Data: bullsEye.cat
bullsEye.target | label Data: bullsEye.target

## -- C --

car | Qualitative data : Car Evaluation
ClusterAlgo | ['ClusterAlgo'] class for Cluster algorithms.
clusterAlgo | Create an instance of the ['ClusterAlgo'] class
ClusterAlgo-class | ['ClusterAlgo'] class for Cluster algorithms.
ClusterAlgoPredict | ['ClusterAlgoPredict'] class for predict algorithm.
clusterAlgoPredict | Create an instance of the ['ClusterAlgoPredict'] class
ClusterAlgoPredict-class | ['ClusterAlgoPredict'] class for predict algorithm.
clusterCategorical | Create an instance of the ['ClusterCategorical'] class
ClusterCategorical-class | Definition of the ['ClusterCategorical'] class
ClusterCategoricalComponent | Definition of the ['ClusterCategoricalComponent'] class
ClusterCategoricalComponent-class | Definition of the ['ClusterCategoricalComponent'] class
clusterCategoricalNames | Create a vector of Categorical mixture model names.
ClusterDiagGaussian | Definition of the ['ClusterDiagGaussian'] class
clusterDiagGaussian | Create an instance of the ['ClusterDiagGaussian'] class
ClusterDiagGaussian-class | Definition of the ['ClusterDiagGaussian'] class
ClusterDiagGaussianComponent | Definition of the ['ClusterDiagGaussianComponent'] class
ClusterDiagGaussianComponent-class | Definition of the ['ClusterDiagGaussianComponent'] class
clusterDiagGaussianNames | Create a vector of diagonal Gaussian mixture model names.
clusterFastStrategy | A strategy is a multistage empirical process for finding a good estimate in the clustering estimation process.
ClusterGamma | Definition of the ['ClusterGamma'] class
clusterGamma | Create an instance of the ['ClusterGamma'] class
ClusterGamma-class | Definition of the ['ClusterGamma'] class
ClusterGamma-method | Plotting of a class ['ClusterGamma']
ClusterGammaComponent | Definition of the ['ClusterGammaComponent'] class
ClusterGammaComponent-class | Definition of the ['ClusterGammaComponent'] class
clusterGammaNames | Create a vector of gamma mixture model names.
ClusterInit | Constructor of the ['ClusterInit'] class
clusterInit | Create an instance of ['ClusterInit'] class
ClusterInit-class | Constructor of the ['ClusterInit'] class
clusterMixedData | Create an instance of the ['ClusterMixedDataModel'] class
ClusterMixedDataModel | Definition of the ['ClusterMixedDataModel'] class
ClusterMixedDataModel-class | Definition of the ['ClusterMixedDataModel'] class
ClusterPoisson | Definition of the ['ClusterPoisson'] class
clusterPoisson | Create an instance of the ['ClusterPoisson'] class
ClusterPoisson-class | Definition of the ['ClusterPoisson'] class
ClusterPoisson-method | Plotting of a class ['ClusterPoisson']
ClusterPoissonComponent | Definition of the ['IClusterComponent'] class
ClusterPoissonComponent-class | Definition of the ['IClusterComponent'] class
clusterPoissonNames | Create a vector of Poisson mixture model names.
ClusterPredict | Class ['ClusterPredict'] for predicting
clusterPredict | Create an instance of ['ClusterPredict'] class
ClusterPredict-class | Class ['ClusterPredict'] for predicting
ClusterPredictMixedData | Class ['ClusterPredictMixedData'] for predicting
ClusterPredictMixedData-class | Class ['ClusterPredictMixedData'] for predicting
clusterSemiSEMStrategy | A strategy is a multistage empirical process for finding a good estimate in the clustering estimation process.
clusterSEMStrategy | A strategy is a multistage empirical process for finding a good estimate in the clustering estimation process.
ClusterStrategy | Constructor of ['ClusterStrategy'] class
clusterStrategy | A strategy is a multistage empirical process for finding a good estimate in the clustering estimation process.
ClusterStrategy-class | Constructor of ['ClusterStrategy'] class
clusterValidCategoricalNames | Create a vector of Categorical mixture model names.
clusterValidDiagGaussianNames | Create a vector of diagonal Gaussian mixture model names.
clusterValidGammaNames | Create a vector of gamma mixture model names.
clusterValidPoissonNames | Create a vector of Poisson mixture model names.

## -- D --

DebTrivedi | Counting Data: DebTrivedi

## -- E --

Extract | Extract parts of a MixAll S4 class

## -- G --

geyser | Quantitative data: Old Faithful Geyser

## -- H --

HeartDisease | Mixed data : Cleveland Heart Disease Data
HeartDisease.cat | Mixed data : Cleveland Heart Disease Data
HeartDisease.cont | Mixed data : Cleveland Heart Disease Data
HeartDisease.target | Mixed data : Cleveland Heart Disease Data

## -- I --

IClusterComponent | Definition of the ['IClusterComponent'] class
IClusterComponent-class | Definition of the ['IClusterComponent'] class
IClusterModel | Interface base Class ['IClusterModel'] for Cluster models.
IClusterModel-class | Interface base Class ['IClusterModel'] for Cluster models.
IClusterPredict | Interface class ['IClusterPredict'] for predicting
IClusterPredict-class | Interface class ['IClusterPredict'] for predicting

## -- K --

kmm | Create an instance of the ['KmmModel'] class
KmmComponent | Definition of the ['KmmComponent'] class
KmmComponent-class | Definition of the ['KmmComponent'] class
kmmMixedData | Create an instance of the ['KmmMixedDataModel'] class
KmmMixedDataModel | Definition of the ['KmmMixedDataModel'] class
KmmMixedDataModel-class | Definition of the ['KmmMixedDataModel'] class
KmmModel | Definition of the ['KmmModel'] class
KmmModel-class | Definition of the ['KmmModel'] class
kmmNames | Create a vector of Kernel mixture model (KMM) names.
kmmStrategy | Create an instance of ['ClusterStrategy'] class
kmmValidKernelNames | Create a vector of Kernel mixture model (KMM) names.
kmmValidModelNames | Create a vector of Kernel mixture model (KMM) names.

## -- L --

LearnAlgo | ['LearnAlgo'] class for Cluster algorithms.
learnAlgo | Create an instance of the ['LearnAlgo'] class
LearnAlgo-class | ['LearnAlgo'] class for Cluster algorithms.
learnCategorical | Create an instance of a learn mixture model
learnDiagGaussian | Create an instance of a learn mixture model
learnGamma | Create an instance of a learn mixture model
learnMixedData | This function learn the optimal mixture model when the class labels are known according to the 'criterion' among the list of model given in 'models'.
learnPoisson | Create an instance of a learn mixture model

## -- M --

missingValues | Return the missing values of a component or a cluster class.
missingValues-method | Return the missing values of a component or a cluster class.

## -- P --

plot-ClusterCategorical | Plotting of a class ['ClusterCategorical']
plot-ClusterDiagGaussian | Plotting of a class ['ClusterDiagGaussian']
plot-ClusterGamma, | Plotting of a class ['ClusterGamma']
plot-ClusterMixedDataModel | Plotting of a class ['ClusterMixedDataModel']
plot-ClusterPoisson, | Plotting of a class ['ClusterPoisson']
plot-KmmComponent | Plotting of a class ['KmmComponent']
plot-KmmMixedDataModel | Plotting of a class ['KmmMixedDataModel']
plot-KmmModel | Plotting of a class ['KmmModel']
plot-method | Plotting of a class ['ClusterCategorical']
plot-method | Plotting of a class ['ClusterDiagGaussian']
plot-method | Plotting of a class ['ClusterGamma']
plot-method | Plotting of a class ['ClusterMixedDataModel']
plot-method | Plotting of a class ['ClusterPoisson']
plot-method | Plotting of a class ['KmmComponent']
plot-method | Plotting of a class ['KmmMixedDataModel']
plot-method | Plotting of a class ['KmmModel']
print | Print a MixAll S4 class to standard output.
print-algo-method | Print a MixAll S4 class to standard output.
print-init-method | Print a MixAll S4 class to standard output.
print-method | Print a MixAll S4 class to standard output.
print-strategy-method | Print a MixAll S4 class to standard output.

## -- S --

show | Show description of a MixAll S4 class to standard output.
show-algo-method | Show description of a MixAll S4 class to standard output.
show-ClusterCategorical-method | Show description of a MixAll S4 class to standard output.
show-ClusterCategoricalComponent-method | Show description of a MixAll S4 class to standard output.
show-ClusterDiagGaussian-method | Show description of a MixAll S4 class to standard output.
show-ClusterDiagGaussianComponent-method | Show description of a MixAll S4 class to standard output.
show-ClusterGamma-method | Show description of a MixAll S4 class to standard output.
show-ClusterGammaComponent-method | Show description of a MixAll S4 class to standard output.
show-ClusterMixedDataModel-method | Show description of a MixAll S4 class to standard output.
show-ClusterPoisson-method | Show description of a MixAll S4 class to standard output.
show-ClusterPoissonComponent-method | Show description of a MixAll S4 class to standard output.
show-IClusterComponent-method | Show description of a MixAll S4 class to standard output.
show-init-method | Show description of a MixAll S4 class to standard output.
show-KmmComponent-method | Show description of a MixAll S4 class to standard output.
show-KmmMixedDataModel-method | Show description of a MixAll S4 class to standard output.
show-KmmModel-method | Show description of a MixAll S4 class to standard output.
show-method | Show description of a MixAll S4 class to standard output.
show-strategy-method | Show description of a MixAll S4 class to standard output.
summary | Produce summary of a MixAll S4 class.
summary-ClusterCategoricalComponent-method | Produce summary of a MixAll S4 class.
summary-method | Produce summary of a MixAll S4 class.

## -- misc --

[ | Extract parts of a MixAll S4 class
[-method | Extract parts of a MixAll S4 class
[<--method | Extract parts of a MixAll S4 class